sematic scholar api key support

semantic-scholar-client/.env.example

@@ -0,0 +1 @@
+SEMANTIC_SCHOLAR_API_KEY=

semantic-scholar-client/.gitignore

@@ -1 +1,2 @@
 /target
+.env

semantic-scholar-client/Cargo.lock

@@ -266,6 +266,12 @@ dependencies = [
  "subtle",
 ]
 
+[[package]]
+name = "dotenv"
+version = "0.15.0"
+source = "registry+https://github.com/rust-lang/crates.io-index"
+checksum = "77c90badedccf4105eca100756a0b1289e191f6fcbdadd3cee1d2f614f97da8f"
+
 [[package]]
 name = "encoding_rs"
 version = "0.8.31"
@@ -1206,6 +1212,7 @@ version = "0.1.0"
 dependencies = [
  "async-recursion",
  "clap",
+ "dotenv",
  "mongodb",
  "reqwest",
  "serde",

semantic-scholar-client/Cargo.toml

@@ -2,12 +2,14 @@
 name = "semantic-scholar-client"
 version = "0.1.0"
 edition = "2021"
+default-run = "import"
 
 # See more keys and their definitions at https://doc.rust-lang.org/cargo/reference/manifest.html
 
 [dependencies]
 async-recursion = "1.0.0"
 clap = { version = "3.2.11", features = ["derive"] }
+dotenv = "0.15.0"
 mongodb = "2.2.2"
 reqwest = { version = "0.11.11", features = ["json"] }
 serde = { version = "1.0.139", features = ["derive"] }

semantic-scholar-client/README.md

@@ -8,6 +8,9 @@ Work in progress to pipe this data into an operating database.
 
 ### Usage
 
+* (Optional) Copy `.env.example` to `.env` and set the value of `SEMANTIC_SCHOLAR_API_KEY`
+* Run the program
+
     cargo run -- --paper-id <paper_id> --depth <depth>
 
 * `paper_id` values are in accordance with [Semantic Scholar API](https://api.semanticscholar.org/api-docs/).
@@ -19,3 +22,4 @@ Ideas for followup work:
 - Consider strategies for deciding where to terminate a given traversal
 - Provide an HTTP/WebSocket interface that can be used to talk to this process during its operation.
   This can enable us to pipe the data to other tasks, to monitor, to start/stop, and even to make configuration changes.
+- Rate limit requests

semantic-scholar-client/src/bin/import.rs

@@ -3,10 +3,11 @@
 
 use async_recursion::async_recursion;
 use clap::Parser;
-use std::cmp::min;
-use std::fmt::Write;
-use std::error::Error;
+use dotenv::dotenv;
 use serde::Deserialize;
+use std::cmp::min;
+use std::error::Error;
+use std::fmt::Write;
 
 type DataResult<T> = Result<T, Box<dyn Error>>;
 
@@ -23,14 +24,13 @@ struct Args {
     /// Starting paper. We will traverse papers that cite this one
     #[clap(short, long, value_parser)]
     paper_id: String,
-
     // Write the results to MongoDB
     // #[clap(short, long, value_parser)]
     // write_to_mongo: bool,
 }
 
 struct Author {
-    name: String
+    name: String,
 }
 
 type Authors = Vec<Author>;
@@ -56,22 +56,28 @@ struct CitingPaper {
 #[derive(Deserialize, Debug)]
 #[serde(rename_all = "camelCase")]
 struct Citation {
-    citing_paper: CitingPaper
+    citing_paper: CitingPaper,
 }
 
 /**
- * Generic struct to wrap the common API response pattern {data: [...]}
- */
+   code: Option<String>,
+* Generic struct to wrap the common API response pattern {data: [...]}
+*/
 #[derive(Deserialize, Debug)]
 struct ApiListResponse<T> {
-    data: Vec<T>
+    data: Option<Vec<T>>,
+    message: Option<String>,
 }
 
-
 // TODO: Cache results in a (separate but local) database such as Redis
 // TODO: Store results in a (separate but local) database such as Postgres
 #[async_recursion]
-async fn get_citations(paper_id: String, depth: u32, authors: &mut Vec<Author>) -> DataResult<Vec<Citation>> {
+async fn get_citations(
+    client: &reqwest::Client,
+    paper_id: String,
+    depth: u32,
+    authors: &mut Vec<Author>,
+) -> DataResult<Vec<Citation>> {
     // Bound recursion to some depth
     if depth > MAX_DEPTH {
         return Ok(vec![]);
@@ -81,12 +87,15 @@ async fn get_citations(paper_id: String, depth: u32, authors: &mut Vec<Author>)
     let mut url = String::new();
     write!(&mut url, "{}/paper/{}/citations", BASE_URL, paper_id)?;
 
-    let resp = reqwest::get(url)
-        .await?
-        .text()
-        .await?;
+    let mut req = client.get(url);
+    let api_key = std::env::var("SEMANTIC_SCHOLAR_API_KEY");
+    if api_key.is_ok() {
+        req = req.header("x-api-key", api_key.unwrap());
+    }
+    let resp = req.send().await?.text().await?;
 
-    let resp_deserialized_attempt = serde_json::from_str::<ApiListResponse<Citation>>(resp.as_str());
+    let resp_deserialized_attempt =
+        serde_json::from_str::<ApiListResponse<Citation>>(resp.as_str());
 
     if let Err(err) = resp_deserialized_attempt {
         println!("depth {} paper {} error {}", depth, paper_id, err);
@@ -95,53 +104,50 @@ async fn get_citations(paper_id: String, depth: u32, authors: &mut Vec<Author>)
 
     let resp_deserialized: ApiListResponse<Citation> = resp_deserialized_attempt.unwrap();
 
-    for Citation{citing_paper: CitingPaper{paper_id: citing_paper_id, title}} in resp_deserialized.data {
+    if resp_deserialized.message.is_some() {
+        println!(
+            "depth {} paper {} error {}",
+            depth,
+            paper_id,
+            resp_deserialized.message.unwrap()
+        );
+        return Ok(vec![]);
+    }
+
+    for Citation {
+        citing_paper:
+            CitingPaper {
+                paper_id: citing_paper_id,
+                title,
+            },
+    } in resp_deserialized.data.unwrap()
+    {
         if let (Some(citing_paper_id), Some(title)) = (citing_paper_id, title) {
             let short_len = min(50, title.len());
             let (short_title, _) = title.split_at(short_len);
-            println!("depth {} paper {} cites {} title {}", depth, citing_paper_id, paper_id, short_title);
+            println!(
+                "depth {} paper {} cites {} title {}",
+                depth, citing_paper_id, paper_id, short_title
+            );
 
-            get_citations(citing_paper_id, depth + 1, authors).await?;
+            get_citations(&client, citing_paper_id, depth + 1, authors).await?;
         }
     }
 
     Ok(vec![])
 }
 
-async fn get_paper_info(paper_id: String, depth: u32, authors: &mut Authors) -> DataResult<Vec<Paper>> {
-    // Build the URL
-    let mut url = String::new();
-    // Probably also want: year,publicationDate,journal", BASE_URL, paper_id)?;
-    const fields: &str = "title, authors, citations";
-    write!(&mut url, "{}/paper/{}?fields={}", BASE_URL, paper_id, fields)?;
-
-    let resp = reqwest::get(url)
-        .await?
-        .text()
-        .await?;
-
-    let resp_deserialized_attempt = serde_json::from_str::<ApiListResponse<Paper>>(resp.as_str());
-
-    if let Err(err) = resp_deserialized_attempt {
-        println!("depth {} paper {} error {}", depth, paper_id, err);
-        return Ok(vec![]);
-    }
-
-    let resp_deserialized: ApiListResponse<Paper> = resp_deserialized_attempt.unwrap();
-    Ok(vec![])
-}
-
 #[tokio::main]
 async fn main() -> Result<(), Box<dyn Error>> {
-    let Args{
-        depth,
-        paper_id,
-        // write_to_mongo,
-    } = Args::parse();
+    let Args { depth, paper_id } = Args::parse();
+
+    dotenv().ok();
 
     let mut authors = Authors::new();
 
-    get_citations(paper_id, depth, &mut authors).await?;
+    let client: reqwest::Client = reqwest::Client::new();
+
+    get_citations(&client, paper_id, depth, &mut authors).await?;
 
     Ok(())
-}
+}